Visions of Daniel
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Brain, Consciousness, and God: A Lonerganian Integration
Spirituality for Our Global Community: Beyond Traditional Religion to a World at Peace. Rowman & Littlefield, 2008.
The Transcended Christian: What Do You Do When You Outgrow Your Religion. 2013 updated and expanded edition: paperback and e-book.
Sex and the Sacred: Gay Identity and Spiritual Growth. The Haworth Press (now with Routledge), 2006.
Meditation without Myth: What I Wish They'd Taught Me in Church about Prayer, Meditation, and the Quest for Peace. Crossroad Publishing Company, 2005.
What the Bible Really Says about Homosexuality. Alamo Square Press, 1994, 2000.
The Human Core of Spirituality: Mind as Psyche and Spirit. State University of New York Press, 1996.
Religion and the Human Sciences: An Approach via Spirituality. State University of New York Press, 1998.
Spiritual Development: An Interdisciplinary Study. Loyola University Press, 1987.
The Same Jesus: A Contemporary Christology. Loyola University Press, 1986.
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